PoplarV1, Main, Exploration, bibRecord, 000E61

Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.

Identifieur interne : 000E61 ( Main/Exploration ); précédent : 000E60; suivant : 000E62

Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.

Auteurs : Qiang Lu [République populaire de Chine] ; Fenjuan Shao [République populaire de Chine] ; Colleen Macmillan [Australie] ; Iain W. Wilson [Australie] ; Karen Van Der Merwe [Afrique du Sud] ; Steven G. Hussey [Afrique du Sud] ; Alexander A. Myburg [Afrique du Sud] ; Xiaomei Dong [République populaire de Chine] ; Deyou Qiu [République populaire de Chine]

Source :

Plant biotechnology journal [ 1467-7652 ] ; 2018.

RBID : pubmed:28499078

Descripteurs français

KwdFr :
- Biologie informatique (MeSH), Eucalyptus (croissance et développement), Eucalyptus (génétique), Eucalyptus (métabolisme), Gibbérellines (métabolisme), Génome végétal (génétique), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes végétaux (génétique), Régulation de l'expression des gènes végétaux (physiologie), Végétaux génétiquement modifiés (croissance et développement), Végétaux génétiquement modifiés (génétique), Végétaux génétiquement modifiés (métabolisme), Xylème (croissance et développement), Xylème (génétique).
MESH :
- croissance et développement : Eucalyptus, Végétaux génétiquement modifiés, Xylème.
- génétique : Eucalyptus, Génome végétal, Protéines végétales, Régulation de l'expression des gènes végétaux, Végétaux génétiquement modifiés, Xylème.
- métabolisme : Eucalyptus, Gibbérellines, Protéines végétales, Végétaux génétiquement modifiés.
- physiologie : Régulation de l'expression des gènes végétaux.
- Biologie informatique.

English descriptors

KwdEn :
- Computational Biology (MeSH), Eucalyptus (genetics), Eucalyptus (growth & development), Eucalyptus (metabolism), Gene Expression Regulation, Plant (genetics), Gene Expression Regulation, Plant (physiology), Genome, Plant (genetics), Gibberellins (metabolism), Plant Proteins (genetics), Plant Proteins (metabolism), Plants, Genetically Modified (genetics), Plants, Genetically Modified (growth & development), Plants, Genetically Modified (metabolism), Xylem (genetics), Xylem (growth & development).
MESH :
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Gibberellins, Plant Proteins.
- genetics : Eucalyptus, Gene Expression Regulation, Plant, Genome, Plant, Plants, Genetically Modified, Xylem.
- growth & development : Eucalyptus, Plants, Genetically Modified, Xylem.
- metabolism : Eucalyptus, Plants, Genetically Modified.
- physiology : Gene Expression Regulation, Plant.
- Computational Biology.

Abstract

Lateral Organ Boundaries Domain (LBD) proteins are plant-specific transcription factors playing crucial roles in growth and development. However, the function of LBD proteins in Eucalyptus grandis remains largely unexplored. In this study, LBD genes in E. grandis were identified and characterized using bioinformatics approaches. Gene expression patterns in various tissues and the transcriptional responses of EgLBDs to exogenous hormones were determined by qRT-PCR. Functions of the selected EgLBDs were studied by ectopically overexpressing in a hybrid poplar (Populus alba × Populus glandulosa). Expression levels of genes in the transgenic plants were investigated by RNA-seq. Our results showed that there were forty-six EgLBD members in the E. grandis genome and three EgLBDs displayed xylem- (EgLBD29) or phloem-preferential expression (EgLBD22 and EgLBD37). Confocal microscopy indicated that EgLBD22, EgLBD29 and EgLBD37 were localized to the nucleus. Furthermore, we found that EgLBD22, EgLBD29 and EgLBD37 were responsive to the treatments of indol-3-acetic acid and gibberellic acid. More importantly, we demonstrated EgLBDs exerted different influences on secondary growth. Namely, 35S::EgLBD37 led to significantly increased secondary xylem, 35S::EgLBD29 led to greatly increased phloem fibre production, and 35S::EgLBD22 showed no obvious effects. We revealed that key genes related to gibberellin, ethylene and auxin signalling pathway as well as cell expansion were significantly up- or down-regulated in transgenic plants. Our new findings suggest that LBD genes in E. grandis play important roles in secondary growth. This provides new mechanisms to increase wood or fibre production.

DOI: 10.1111/pbi.12754
PubMed: 28499078
PubMed Central: PMC5785364

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Computational Biology (MeSH)</term>
<term>Eucalyptus (genetics)</term>
<term>Eucalyptus (growth & development)</term>
<term>Eucalyptus (metabolism)</term>
<term>Gene Expression Regulation, Plant (genetics)</term>
<term>Gene Expression Regulation, Plant (physiology)</term>
<term>Genome, Plant (genetics)</term>
<term>Gibberellins (metabolism)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plants, Genetically Modified (genetics)</term>
<term>Plants, Genetically Modified (growth & development)</term>
<term>Plants, Genetically Modified (metabolism)</term>
<term>Xylem (genetics)</term>
<term>Xylem (growth & development)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Biologie informatique (MeSH)</term>
<term>Eucalyptus (croissance et développement)</term>
<term>Eucalyptus (génétique)</term>
<term>Eucalyptus (métabolisme)</term>
<term>Gibbérellines (métabolisme)</term>
<term>Génome végétal (génétique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (physiologie)</term>
<term>Végétaux génétiquement modifiés (croissance et développement)</term>
<term>Végétaux génétiquement modifiés (génétique)</term>
<term>Végétaux génétiquement modifiés (métabolisme)</term>
<term>Xylème (croissance et développement)</term>
<term>Xylème (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Gibberellins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Eucalyptus</term>
<term>Végétaux génétiquement modifiés</term>
<term>Xylème</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Eucalyptus</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genome, Plant</term>
<term>Plants, Genetically Modified</term>
<term>Xylem</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Eucalyptus</term>
<term>Plants, Genetically Modified</term>
<term>Xylem</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Eucalyptus</term>
<term>Génome végétal</term>
<term>Protéines végétales</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Végétaux génétiquement modifiés</term>
<term>Xylème</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Eucalyptus</term>
<term>Plants, Genetically Modified</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Eucalyptus</term>
<term>Gibbérellines</term>
<term>Protéines végétales</term>
<term>Végétaux génétiquement modifiés</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Régulation de l'expression des gènes végétaux</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Gene Expression Regulation, Plant</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Computational Biology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Biologie informatique</term>
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<front><div type="abstract" xml:lang="en">Lateral Organ Boundaries Domain (LBD) proteins are plant-specific transcription factors playing crucial roles in growth and development. However, the function of LBD proteins in Eucalyptus grandis remains largely unexplored. In this study, LBD genes in E. grandis were identified and characterized using bioinformatics approaches. Gene expression patterns in various tissues and the transcriptional responses of EgLBDs to exogenous hormones were determined by qRT-PCR. Functions of the selected EgLBDs were studied by ectopically overexpressing in a hybrid poplar (Populus alba × Populus glandulosa). Expression levels of genes in the transgenic plants were investigated by RNA-seq. Our results showed that there were forty-six EgLBD members in the E. grandis genome and three EgLBDs displayed xylem- (EgLBD29) or phloem-preferential expression (EgLBD22 and EgLBD37). Confocal microscopy indicated that EgLBD22, EgLBD29 and EgLBD37 were localized to the nucleus. Furthermore, we found that EgLBD22, EgLBD29 and EgLBD37 were responsive to the treatments of indol-3-acetic acid and gibberellic acid. More importantly, we demonstrated EgLBDs exerted different influences on secondary growth. Namely, 35S::EgLBD37 led to significantly increased secondary xylem, 35S::EgLBD29 led to greatly increased phloem fibre production, and 35S::EgLBD22 showed no obvious effects. We revealed that key genes related to gibberellin, ethylene and auxin signalling pathway as well as cell expansion were significantly up- or down-regulated in transgenic plants. Our new findings suggest that LBD genes in E. grandis play important roles in secondary growth. This provides new mechanisms to increase wood or fibre production.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28499078</PMID>
<DateCompleted><Year>2018</Year>
<Month>12</Month>
<Day>11</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>12</Month>
<Day>11</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1467-7652</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>16</Volume>
<Issue>1</Issue>
<PubDate><Year>2018</Year>
<Month>01</Month>
</PubDate>
</JournalIssue>
<Title>Plant biotechnology journal</Title>
<ISOAbbreviation>Plant Biotechnol J</ISOAbbreviation>
</Journal>
<ArticleTitle>Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.</ArticleTitle>
<Pagination><MedlinePgn>124-136</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1111/pbi.12754</ELocationID>
<Abstract><AbstractText>Lateral Organ Boundaries Domain (LBD) proteins are plant-specific transcription factors playing crucial roles in growth and development. However, the function of LBD proteins in Eucalyptus grandis remains largely unexplored. In this study, LBD genes in E. grandis were identified and characterized using bioinformatics approaches. Gene expression patterns in various tissues and the transcriptional responses of EgLBDs to exogenous hormones were determined by qRT-PCR. Functions of the selected EgLBDs were studied by ectopically overexpressing in a hybrid poplar (Populus alba × Populus glandulosa). Expression levels of genes in the transgenic plants were investigated by RNA-seq. Our results showed that there were forty-six EgLBD members in the E. grandis genome and three EgLBDs displayed xylem- (EgLBD29) or phloem-preferential expression (EgLBD22 and EgLBD37). Confocal microscopy indicated that EgLBD22, EgLBD29 and EgLBD37 were localized to the nucleus. Furthermore, we found that EgLBD22, EgLBD29 and EgLBD37 were responsive to the treatments of indol-3-acetic acid and gibberellic acid. More importantly, we demonstrated EgLBDs exerted different influences on secondary growth. Namely, 35S::EgLBD37 led to significantly increased secondary xylem, 35S::EgLBD29 led to greatly increased phloem fibre production, and 35S::EgLBD22 showed no obvious effects. We revealed that key genes related to gibberellin, ethylene and auxin signalling pathway as well as cell expansion were significantly up- or down-regulated in transgenic plants. Our new findings suggest that LBD genes in E. grandis play important roles in secondary growth. This provides new mechanisms to increase wood or fibre production.</AbstractText>
<CopyrightInformation>© 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lu</LastName>
<ForeName>Qiang</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shao</LastName>
<ForeName>Fenjuan</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Macmillan</LastName>
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   |texte=   Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.
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Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.

Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.

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